We study evolutionary biology, ecology, and cultural evolution using mathematical, computational, and statistical models and collaborations with experimental biologists.
If you want to be involved, please email Yoav.
We developed a theoretical basis to explain the evolution of stress-induced mutagenesis – the phenomena in which stress induces a transient increase in mutation rates. Stress-induced mutagenesis is prevalent in bacteria and empirical evidence suggests that it is common in many eukaryote species, from yeast to human cancer cells. We used mathematical models and computer simulations to show that (i) stress-induced mutagenesis is favored by natural selection (Ram & Hadany 2012; Ram, Altenberg, Liberman & Feldman, 2018); (ii) that this is also true in the presence of rare recombination (Ram & Hadany, in review); (iii) that stress-induced mutagenesis increases the rate of complex adaptation without reducing the mean fitness of the population (Ram & Hadany, 2014); (iv) errors in regulation of mutagenesis can be compensated by cell-to-cell signalling (Dellus-Gur et al., 2017).
We collaborated to develop and test a new method for predicting microbial growth in a mixed culture solely from growth curve data (Ram et al., submitted). To validate this method, we performed growth curve and competition experiments with bacteria. Our new method not only results in a simple and cost-effective approach for estimating growth in a mixed culture and inferring competitive fitness in microbes, but also provides information on the specific growth traits that contribute to differences in fitness, thus helping to bridge the gap between microbial ecology and evolution.
We also collaborated with the Kupiec lab at Tel Aviv University to analyse results of evolutionary experiments (Harari et al., 2018). In these experiments, haploid yeast cells frequently became diploid via two distinct genetic mechanisms. Using approximate Bayesian approximation (ABC), we estimated the rate of endoreduplication in these experiments, and found that in it was much higher than the mutation rate.
We studied the evolution of oblique transmission, in which offspring inherit their phenotype from a non-parental adult rather than their parents. This occurs, for example, in social learning, symbiont and pathogen transmission, and transfer of mobile genetic elements in microbes. We found that the evolutionarily stable rate of oblique transmission differs markedly from the rate that maximizes the geometric mean fitness of the population, implying a form of "prisoner's dilemma" for social learning (Ram, Liberman & Feldman, 2018).